FST windows of interest

For each sample set, we first provide a summary plot of FST bewteen resistant and susceptible samples across the genome, with FST shown in red and the results of the 200 randomisations shown behind in grey. Windows identified as peaks are highlighted by points, colour-coded by whether they are significantly higher than expected based on the simulations (green) or not (purple). For each significant window (green points), we then provide four additional figures. The first shows the significant (P < 0.01) SNPs found in the region of that window, and their -log10(Pvalue) of association with phenotype. Red points indicate non-synonymous SNPs, blue points indicate all other SNPs. Point shape indicates whether the mutant allele at that SNP is associated with increased (circle) or decreased (triangle) resistance. Dark points in the centre of the plot show SNPs within the significant window, light points on the sides show SNPs in region 10,000 bp either side of the window. The second plot shows the hierarchical cluster of haplotypes in the window, with brackets indicating large haplotype clusters. The third plot shows, each haplotype cluster, indicating the number of haplotypes comprising the cluster (n), the P value of association of the cluster with resistance phenotype, and the SNPs that differentiate that cluster from other haplotypes in the region, colour-coded by type (red = non-synonymous, yellow = synonymous, blue = non-coding). The final figure shows the contingency tables of phenotype association for each haplotype cluster.

Legend
Avrankou_coluzzii_Delta
Baguida_gambiae_Delta
Korle-Bu_coluzzii_Delta
Madina_gambiae_Delta
Obuasi_gambiae_Delta
Baguida_gambiae_PM
Korle-Bu_coluzzii_PM
Madina_gambiae_PM
Obuasi_gambiae_PM

Plot legend

legend

Avrankou_coluzzii_Delta

Avrankou_coluzzii_Delta_peak_filter

 

Avrankou_coluzzii_Delta_2R:45413683-45433265
Avrankou_coluzzii_Delta_X:8745589-8778998

Avrankou_coluzzii_Delta_2R_45413683-45433265

 

Avrankou_coluzzii_Delta_2R:45413683-45433265_overview

 

Avrankou_coluzzii_Delta_2R:45413683-45433265_dendrogram

 

Avrankou_coluzzii_Delta_2R:45413683-45433265_haplotypes

 

Avrankou_coluzzii_Delta_X_8745589-8778998

 

Avrankou_coluzzii_Delta_X:8745589-8778998_overview

 

Avrankou_coluzzii_Delta_X:8745589-8778998_dendrogram

 

Avrankou_coluzzii_Delta_X:8745589-8778998_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 11 22 12
dead 14 16 4

 

Baguida_gambiae_Delta

Baguida_gambiae_Delta_peak_filter

 

Baguida_gambiae_Delta_2R:33967209-33981960
Baguida_gambiae_Delta_3L:3059554-3112922

Baguida_gambiae_Delta_2R_33967209-33981960

 

Baguida_gambiae_Delta_2R:33967209-33981960_overview

 

Baguida_gambiae_Delta_2R:33967209-33981960_dendrogram

 

Baguida_gambiae_Delta_2R:33967209-33981960_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 31 21 2
dead 31 3 0

 

Baguida_gambiae_Delta_3L_3059554-3112922

 

Baguida_gambiae_Delta_3L:3059554-3112922_overview

 

Baguida_gambiae_Delta_3L:3059554-3112922_dendrogram

 

Baguida_gambiae_Delta_3L:3059554-3112922_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 37 8 9
dead 11 21 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 39 14 1
dead 28 6 0

 

Korle-Bu_coluzzii_Delta

Korle-Bu_coluzzii_Delta_peak_filter

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331
Korle-Bu_coluzzii_Delta_2R:39682306-39698081
Korle-Bu_coluzzii_Delta_3R:50971406-51021318
Korle-Bu_coluzzii_Delta_X:14653714-14668824
Korle-Bu_coluzzii_Delta_X:14668824-14684264
Korle-Bu_coluzzii_Delta_X:15670884-15702974
Korle-Bu_coluzzii_Delta_X:15702974-15756306

Korle-Bu_coluzzii_Delta_2R_28145243-28168331

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331_overview

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331_dendrogram

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 52 7 0
dead 52 30 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 46 12 1
dead 69 13 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 50 9 0
dead 67 16 0

 

Contingency table for cluster_4:

    phenotype         wt         het         hom    
alive 48 11 0
dead 72 11 0

 

Korle-Bu_coluzzii_Delta_2R_39682306-39698081

 

Korle-Bu_coluzzii_Delta_2R:39682306-39698081_overview

 

Korle-Bu_coluzzii_Delta_2R:39682306-39698081_dendrogram

 

Korle-Bu_coluzzii_Delta_2R:39682306-39698081_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 47 12 0
dead 65 16 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 42 16 1
dead 77 6 0

 

Korle-Bu_coluzzii_Delta_3R_50971406-51021318

 

Korle-Bu_coluzzii_Delta_3R:50971406-51021318_overview

 

Korle-Bu_coluzzii_Delta_3R:50971406-51021318_dendrogram

 

Korle-Bu_coluzzii_Delta_3R:50971406-51021318_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 44 13 2
dead 53 26 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 45 14 0
dead 75 7 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 49 10 0
dead 72 10 1

 

Korle-Bu_coluzzii_Delta_X_14653714-14668824

 

Korle-Bu_coluzzii_Delta_X:14653714-14668824_overview

 

Korle-Bu_coluzzii_Delta_X:14653714-14668824_dendrogram

 

Korle-Bu_coluzzii_Delta_X:14653714-14668824_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 26 3
dead 58 24 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 49 9 1
dead 69 12 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 51 8 0
dead 70 13 0

 

Korle-Bu_coluzzii_Delta_X_14668824-14684264

 

Korle-Bu_coluzzii_Delta_X:14668824-14684264_overview

 

Korle-Bu_coluzzii_Delta_X:14668824-14684264_dendrogram

 

Korle-Bu_coluzzii_Delta_X:14668824-14684264_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 31 25 3
dead 58 24 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 47 11 1
dead 69 12 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 51 8 0
dead 70 13 0

 

Korle-Bu_coluzzii_Delta_X_15670884-15702974

 

Korle-Bu_coluzzii_Delta_X:15670884-15702974_overview

 

Korle-Bu_coluzzii_Delta_X:15670884-15702974_dendrogram

 

Korle-Bu_coluzzii_Delta_X:15670884-15702974_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 13 32 14
dead 37 35 11

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 52 7 0
dead 69 14 0

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 53 6 0
dead 68 15 0

 

Korle-Bu_coluzzii_Delta_X_15702974-15756306

 

Korle-Bu_coluzzii_Delta_X:15702974-15756306_overview

 

Korle-Bu_coluzzii_Delta_X:15702974-15756306_dendrogram

 

Korle-Bu_coluzzii_Delta_X:15702974-15756306_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 12 38 9
dead 38 35 10

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 52 7 0
dead 68 14 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 52 7 0
dead 69 14 0

 

Madina_gambiae_Delta

Madina_gambiae_Delta_peak_filter

 

Madina_gambiae_Delta_2R:28401363-28416200
Madina_gambiae_Delta_2R:28454838-28474602

Madina_gambiae_Delta_2R_28401363-28416200

 

Madina_gambiae_Delta_2R:28401363-28416200_overview

 

Madina_gambiae_Delta_2R:28401363-28416200_dendrogram

 

Madina_gambiae_Delta_2R:28401363-28416200_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 13 33 18
dead 14 21 2

 

Madina_gambiae_Delta_2R_28454838-28474602

 

Madina_gambiae_Delta_2R:28454838-28474602_overview

 

Madina_gambiae_Delta_2R:28454838-28474602_dendrogram

 

Madina_gambiae_Delta_2R:28454838-28474602_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 8 33 23
dead 12 20 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 50 13 1
dead 26 10 1

 

Obuasi_gambiae_Delta

Obuasi_gambiae_Delta_peak_filter

 

Obuasi_gambiae_Delta_2R:28250033-28262588
Obuasi_gambiae_Delta_2R:28262588-28274893
Obuasi_gambiae_Delta_2R:28274893-28289873
Obuasi_gambiae_Delta_2R:28289873-28306606
Obuasi_gambiae_Delta_2R:28306605-28322681
Obuasi_gambiae_Delta_2R:28322681-28337951
Obuasi_gambiae_Delta_2R:28337951-28354693
Obuasi_gambiae_Delta_2R:28354692-28369784
Obuasi_gambiae_Delta_2R:28369784-28391434
Obuasi_gambiae_Delta_2R:28391433-28405240
Obuasi_gambiae_Delta_2R:28405239-28421116
Obuasi_gambiae_Delta_2R:28421116-28439220
Obuasi_gambiae_Delta_2R:28439219-28456407
Obuasi_gambiae_Delta_2R:28456407-28475225
Obuasi_gambiae_Delta_2R:28475225-28496115
Obuasi_gambiae_Delta_2R:28496114-28515482
Obuasi_gambiae_Delta_2R:28515481-28531112

Obuasi_gambiae_Delta_2R_28250033-28262588

 

Obuasi_gambiae_Delta_2R:28250033-28262588_overview

 

Obuasi_gambiae_Delta_2R:28250033-28262588_dendrogram

 

Obuasi_gambiae_Delta_2R:28250033-28262588_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 11 16 0
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28262588-28274893

 

Obuasi_gambiae_Delta_2R:28262588-28274893_overview

 

Obuasi_gambiae_Delta_2R:28262588-28274893_dendrogram

 

Obuasi_gambiae_Delta_2R:28262588-28274893_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 10 15 2
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28274893-28289873

 

Obuasi_gambiae_Delta_2R:28274893-28289873_overview

 

Obuasi_gambiae_Delta_2R:28274893-28289873_dendrogram

 

Obuasi_gambiae_Delta_2R:28274893-28289873_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 10 14 3
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28289873-28306606

 

Obuasi_gambiae_Delta_2R:28289873-28306606_overview

 

Obuasi_gambiae_Delta_2R:28289873-28306606_dendrogram

 

Obuasi_gambiae_Delta_2R:28289873-28306606_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 14 4
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 17 1

 

Obuasi_gambiae_Delta_2R_28306605-28322681

 

Obuasi_gambiae_Delta_2R:28306605-28322681_overview

 

Obuasi_gambiae_Delta_2R:28306605-28322681_dendrogram

 

Obuasi_gambiae_Delta_2R:28306605-28322681_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 10 14 3
dead 38 13 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 17 1

 

Obuasi_gambiae_Delta_2R_28322681-28337951

 

Obuasi_gambiae_Delta_2R:28322681-28337951_overview

 

Obuasi_gambiae_Delta_2R:28322681-28337951_dendrogram

 

Obuasi_gambiae_Delta_2R:28322681-28337951_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 14 4
dead 37 14 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 34 16 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 24 3 0
dead 34 16 1

 

Obuasi_gambiae_Delta_2R_28337951-28354693

 

Obuasi_gambiae_Delta_2R:28337951-28354693_overview

 

Obuasi_gambiae_Delta_2R:28337951-28354693_dendrogram

 

Obuasi_gambiae_Delta_2R:28337951-28354693_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 14 4
dead 36 15 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 33 17 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 22 5 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28354692-28369784

 

Obuasi_gambiae_Delta_2R:28354692-28369784_overview

 

Obuasi_gambiae_Delta_2R:28354692-28369784_dendrogram

 

Obuasi_gambiae_Delta_2R:28354692-28369784_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 8 15 4
dead 35 16 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28369784-28391434

 

Obuasi_gambiae_Delta_2R:28369784-28391434_overview

 

Obuasi_gambiae_Delta_2R:28369784-28391434_dendrogram

 

Obuasi_gambiae_Delta_2R:28369784-28391434_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 8 15 4
dead 35 15 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 35 15 1

 

Obuasi_gambiae_Delta_2R_28391433-28405240

 

Obuasi_gambiae_Delta_2R:28391433-28405240_overview

 

Obuasi_gambiae_Delta_2R:28391433-28405240_dendrogram

 

Obuasi_gambiae_Delta_2R:28391433-28405240_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 7 16 4
dead 34 15 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 35 15 1

 

Obuasi_gambiae_Delta_2R_28405239-28421116

 

Obuasi_gambiae_Delta_2R:28405239-28421116_overview

 

Obuasi_gambiae_Delta_2R:28405239-28421116_dendrogram

 

Obuasi_gambiae_Delta_2R:28405239-28421116_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 11 7
dead 32 17 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 21 6 0
dead 35 15 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 24 3 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28421116-28439220

 

Obuasi_gambiae_Delta_2R:28421116-28439220_overview

 

Obuasi_gambiae_Delta_2R:28421116-28439220_dendrogram

 

Obuasi_gambiae_Delta_2R:28421116-28439220_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 7 13 7
dead 29 18 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 33 16 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28439219-28456407

 

Obuasi_gambiae_Delta_2R:28439219-28456407_overview

 

Obuasi_gambiae_Delta_2R:28439219-28456407_dendrogram

 

Obuasi_gambiae_Delta_2R:28439219-28456407_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 4 14 9
dead 27 17 7

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 20 7 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28456407-28475225

 

Obuasi_gambiae_Delta_2R:28456407-28475225_overview

 

Obuasi_gambiae_Delta_2R:28456407-28475225_dendrogram

 

Obuasi_gambiae_Delta_2R:28456407-28475225_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 3 15 9
dead 25 19 7

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 20 7 0
dead 38 12 1

 

Obuasi_gambiae_Delta_2R_28475225-28496115

 

Obuasi_gambiae_Delta_2R:28475225-28496115_overview

 

Obuasi_gambiae_Delta_2R:28475225-28496115_dendrogram

 

Obuasi_gambiae_Delta_2R:28475225-28496115_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 7 12 8
dead 28 18 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 19 8 0
dead 39 11 1

 

Obuasi_gambiae_Delta_2R_28496114-28515482

 

Obuasi_gambiae_Delta_2R:28496114-28515482_overview

 

Obuasi_gambiae_Delta_2R:28496114-28515482_dendrogram

 

Obuasi_gambiae_Delta_2R:28496114-28515482_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 11 9 7
dead 30 16 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 17 10 0
dead 38 12 1

 

Obuasi_gambiae_Delta_2R_28515481-28531112

 

Obuasi_gambiae_Delta_2R:28515481-28531112_overview

 

Obuasi_gambiae_Delta_2R:28515481-28531112_dendrogram

 

Obuasi_gambiae_Delta_2R:28515481-28531112_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 13 11 3
dead 35 12 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 14 12 1
dead 38 12 1

 

Baguida_gambiae_PM

Baguida_gambiae_PM_peak_filter

 

Baguida_gambiae_PM_X:15411876-15495650
Baguida_gambiae_PM_X:9165646-9222299
Baguida_gambiae_PM_X:9222298-9273975
Baguida_gambiae_PM_X:9273975-9317640
Baguida_gambiae_PM_X:9317639-9346605

Baguida_gambiae_PM_X_15411876-15495650

 

Baguida_gambiae_PM_X:15411876-15495650_overview

 

Baguida_gambiae_PM_X:15411876-15495650_dendrogram

 

Baguida_gambiae_PM_X:15411876-15495650_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 17 14 4
dead 13 12 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 11 0
dead 12 16 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 20 11 4
dead 24 5 1

 

Baguida_gambiae_PM_X_9165646-9222299

 

Baguida_gambiae_PM_X:9165646-9222299_overview

 

Baguida_gambiae_PM_X:9165646-9222299_dendrogram

 

Baguida_gambiae_PM_X:9165646-9222299_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 6 13 16
dead 9 13 8

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 10 1
dead 10 14 6

 

Baguida_gambiae_PM_X_9222298-9273975

 

Baguida_gambiae_PM_X:9222298-9273975_overview

 

Baguida_gambiae_PM_X:9222298-9273975_dendrogram

 

Baguida_gambiae_PM_X:9222298-9273975_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 16 13 6
dead 13 15 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 10 1
dead 10 14 6

 

Baguida_gambiae_PM_X_9273975-9317640

 

Baguida_gambiae_PM_X:9273975-9317640_overview

 

Baguida_gambiae_PM_X:9273975-9317640_dendrogram

 

Baguida_gambiae_PM_X:9273975-9317640_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 10 1
dead 10 14 6

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 20 11 4
dead 19 11 0

 

Baguida_gambiae_PM_X_9317639-9346605

 

Baguida_gambiae_PM_X:9317639-9346605_overview

 

Baguida_gambiae_PM_X:9317639-9346605_dendrogram

 

Baguida_gambiae_PM_X:9317639-9346605_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 10 1
dead 11 14 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 19 14 2
dead 22 8 0

 

Korle-Bu_coluzzii_PM

Korle-Bu_coluzzii_PM_peak_filter

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826
Korle-Bu_coluzzii_PM_2R:54371673-54397846
Korle-Bu_coluzzii_PM_3R:28482794-28505651
Korle-Bu_coluzzii_PM_3R:28505651-28533744
Korle-Bu_coluzzii_PM_3R:28563392-28595112
Korle-Bu_coluzzii_PM_3R:2929236-2946500

Korle-Bu_coluzzii_PM_2R_38097626-38111826

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826_overview

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826_dendrogram

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826_haplotypes

 

Korle-Bu_coluzzii_PM_2R_54371673-54397846

 

Korle-Bu_coluzzii_PM_2R:54371673-54397846_overview

 

Korle-Bu_coluzzii_PM_2R:54371673-54397846_dendrogram

 

Korle-Bu_coluzzii_PM_2R:54371673-54397846_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 22 5
dead 34 9 5

 

Korle-Bu_coluzzii_PM_3R_28482794-28505651

 

Korle-Bu_coluzzii_PM_3R:28482794-28505651_overview

 

Korle-Bu_coluzzii_PM_3R:28482794-28505651_dendrogram

 

Korle-Bu_coluzzii_PM_3R:28482794-28505651_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 34 20 3
dead 14 28 6

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 34 19 4
dead 40 8 0

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 39 17 1
dead 41 6 1

 

Korle-Bu_coluzzii_PM_3R_28505651-28533744

 

Korle-Bu_coluzzii_PM_3R:28505651-28533744_overview

 

Korle-Bu_coluzzii_PM_3R:28505651-28533744_dendrogram

 

Korle-Bu_coluzzii_PM_3R:28505651-28533744_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 37 17 3
dead 15 29 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 26 24 7
dead 31 16 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 39 15 3
dead 40 7 1

 

Korle-Bu_coluzzii_PM_3R_28563392-28595112

 

Korle-Bu_coluzzii_PM_3R:28563392-28595112_overview

 

Korle-Bu_coluzzii_PM_3R:28563392-28595112_dendrogram

 

Korle-Bu_coluzzii_PM_3R:28563392-28595112_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 20 27 10
dead 20 25 3

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 38 17 2
dead 18 25 5

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 38 16 3
dead 41 6 1

 

Korle-Bu_coluzzii_PM_3R_2929236-2946500

 

Korle-Bu_coluzzii_PM_3R:2929236-2946500_overview

 

Korle-Bu_coluzzii_PM_3R:2929236-2946500_dendrogram

 

Korle-Bu_coluzzii_PM_3R:2929236-2946500_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 26 7
dead 7 27 14

 

Madina_gambiae_PM

Madina_gambiae_PM_peak_filter

 

Madina_gambiae_PM_2R:54255612-54278008

Madina_gambiae_PM_2R_54255612-54278008

 

Madina_gambiae_PM_2R:54255612-54278008_overview

 

Madina_gambiae_PM_2R:54255612-54278008_dendrogram

 

Madina_gambiae_PM_2R:54255612-54278008_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 31 7 0
dead 14 12 1

 

Obuasi_gambiae_PM

Obuasi_gambiae_PM_peak_filter

 

Obuasi_gambiae_PM_2R:3474360-3509400
Obuasi_gambiae_PM_3L:30477135-30487616
Obuasi_gambiae_PM_3L:30487615-30497759
Obuasi_gambiae_PM_3L:30497758-30506894
Obuasi_gambiae_PM_3L:30506893-30516797
Obuasi_gambiae_PM_3L:30534828-30545854
Obuasi_gambiae_PM_3L:30554459-30562573
Obuasi_gambiae_PM_3L:30562572-30578511
Obuasi_gambiae_PM_3L:30578511-30587941
Obuasi_gambiae_PM_3L:30587941-30597762
Obuasi_gambiae_PM_3L:30597761-30607138
Obuasi_gambiae_PM_3L:30607137-30617085
Obuasi_gambiae_PM_3L:30617085-30624950
Obuasi_gambiae_PM_3L:30624949-30635698
Obuasi_gambiae_PM_3L:30635698-30646602
Obuasi_gambiae_PM_3L:30646601-30657763
Obuasi_gambiae_PM_3L:30657762-30667355
Obuasi_gambiae_PM_3L:30667355-30678119
Obuasi_gambiae_PM_3L:30678119-30687769
Obuasi_gambiae_PM_3L:30687769-30697180
Obuasi_gambiae_PM_3R:48454456-48494640

Obuasi_gambiae_PM_2R_3474360-3509400

 

Obuasi_gambiae_PM_2R:3474360-3509400_overview

 

Obuasi_gambiae_PM_2R:3474360-3509400_dendrogram

 

Obuasi_gambiae_PM_2R:3474360-3509400_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 1 2 51
dead 1 16 33

 

Obuasi_gambiae_PM_3L_30477135-30487616

 

Obuasi_gambiae_PM_3L:30477135-30487616_overview

 

Obuasi_gambiae_PM_3L:30477135-30487616_dendrogram

 

Obuasi_gambiae_PM_3L:30477135-30487616_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 37 16 1
dead 17 28 5

 

Obuasi_gambiae_PM_3L_30487615-30497759

 

Obuasi_gambiae_PM_3L:30487615-30497759_overview

 

Obuasi_gambiae_PM_3L:30487615-30497759_dendrogram

 

Obuasi_gambiae_PM_3L:30487615-30497759_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 33 20 1
dead 14 29 7

 

Obuasi_gambiae_PM_3L_30497758-30506894

 

Obuasi_gambiae_PM_3L:30497758-30506894_overview

 

Obuasi_gambiae_PM_3L:30497758-30506894_dendrogram

 

Obuasi_gambiae_PM_3L:30497758-30506894_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 36 17 1
dead 13 31 6

 

Obuasi_gambiae_PM_3L_30506893-30516797

 

Obuasi_gambiae_PM_3L:30506893-30516797_overview

 

Obuasi_gambiae_PM_3L:30506893-30516797_dendrogram

 

Obuasi_gambiae_PM_3L:30506893-30516797_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 19 0
dead 15 29 6

 

Obuasi_gambiae_PM_3L_30534828-30545854

 

Obuasi_gambiae_PM_3L:30534828-30545854_overview

 

Obuasi_gambiae_PM_3L:30534828-30545854_dendrogram

 

Obuasi_gambiae_PM_3L:30534828-30545854_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 18 1
dead 15 31 4

 

Obuasi_gambiae_PM_3L_30554459-30562573

 

Obuasi_gambiae_PM_3L:30554459-30562573_overview

 

Obuasi_gambiae_PM_3L:30554459-30562573_dendrogram

 

Obuasi_gambiae_PM_3L:30554459-30562573_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 36 17 1
dead 16 29 5

 

Obuasi_gambiae_PM_3L_30562572-30578511

 

Obuasi_gambiae_PM_3L:30562572-30578511_overview

 

Obuasi_gambiae_PM_3L:30562572-30578511_dendrogram

 

Obuasi_gambiae_PM_3L:30562572-30578511_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 36 16 2
dead 16 29 5

 

Obuasi_gambiae_PM_3L_30578511-30587941

 

Obuasi_gambiae_PM_3L:30578511-30587941_overview

 

Obuasi_gambiae_PM_3L:30578511-30587941_dendrogram

 

Obuasi_gambiae_PM_3L:30578511-30587941_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 17 2
dead 15 28 7

 

Obuasi_gambiae_PM_3L_30587941-30597762

 

Obuasi_gambiae_PM_3L:30587941-30597762_overview

 

Obuasi_gambiae_PM_3L:30587941-30597762_dendrogram

 

Obuasi_gambiae_PM_3L:30587941-30597762_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 17 2
dead 15 28 7

 

Obuasi_gambiae_PM_3L_30597761-30607138

 

Obuasi_gambiae_PM_3L:30597761-30607138_overview

 

Obuasi_gambiae_PM_3L:30597761-30607138_dendrogram

 

Obuasi_gambiae_PM_3L:30597761-30607138_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 17 2
dead 15 28 7

 

Obuasi_gambiae_PM_3L_30607137-30617085

 

Obuasi_gambiae_PM_3L:30607137-30617085_overview

 

Obuasi_gambiae_PM_3L:30607137-30617085_dendrogram

 

Obuasi_gambiae_PM_3L:30607137-30617085_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 34 18 2
dead 15 27 8

 

Obuasi_gambiae_PM_3L_30617085-30624950

 

Obuasi_gambiae_PM_3L:30617085-30624950_overview

 

Obuasi_gambiae_PM_3L:30617085-30624950_dendrogram

 

Obuasi_gambiae_PM_3L:30617085-30624950_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 33 18 3
dead 15 25 10

 

Obuasi_gambiae_PM_3L_30624949-30635698

 

Obuasi_gambiae_PM_3L:30624949-30635698_overview

 

Obuasi_gambiae_PM_3L:30624949-30635698_dendrogram

 

Obuasi_gambiae_PM_3L:30624949-30635698_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 21 3
dead 10 28 12

 

Obuasi_gambiae_PM_3L_30635698-30646602

 

Obuasi_gambiae_PM_3L:30635698-30646602_overview

 

Obuasi_gambiae_PM_3L:30635698-30646602_dendrogram

 

Obuasi_gambiae_PM_3L:30635698-30646602_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 21 3
dead 10 28 12

 

Obuasi_gambiae_PM_3L_30646601-30657763

 

Obuasi_gambiae_PM_3L:30646601-30657763_overview

 

Obuasi_gambiae_PM_3L:30646601-30657763_dendrogram

 

Obuasi_gambiae_PM_3L:30646601-30657763_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 28 24 2
dead 11 29 10

 

Obuasi_gambiae_PM_3L_30657762-30667355

 

Obuasi_gambiae_PM_3L:30657762-30667355_overview

 

Obuasi_gambiae_PM_3L:30657762-30667355_dendrogram

 

Obuasi_gambiae_PM_3L:30657762-30667355_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 28 24 2
dead 11 30 9

 

Obuasi_gambiae_PM_3L_30667355-30678119

 

Obuasi_gambiae_PM_3L:30667355-30678119_overview

 

Obuasi_gambiae_PM_3L:30667355-30678119_dendrogram

 

Obuasi_gambiae_PM_3L:30667355-30678119_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 27 25 2
dead 10 31 9

 

Obuasi_gambiae_PM_3L_30678119-30687769

 

Obuasi_gambiae_PM_3L:30678119-30687769_overview

 

Obuasi_gambiae_PM_3L:30678119-30687769_dendrogram

 

Obuasi_gambiae_PM_3L:30678119-30687769_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 26 26 2
dead 11 29 10

 

Obuasi_gambiae_PM_3L_30687769-30697180

 

Obuasi_gambiae_PM_3L:30687769-30697180_overview

 

Obuasi_gambiae_PM_3L:30687769-30697180_dendrogram

 

Obuasi_gambiae_PM_3L:30687769-30697180_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 26 26 2
dead 9 30 11

 

Obuasi_gambiae_PM_3R_48454456-48494640

 

Obuasi_gambiae_PM_3R:48454456-48494640_overview

 

Obuasi_gambiae_PM_3R:48454456-48494640_dendrogram

 

Obuasi_gambiae_PM_3R:48454456-48494640_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 24 6
dead 39 9 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 43 10 1
dead 38 9 3

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 44 10 0
dead 39 10 1